Package: ridge 3.3

ridge: Ridge Regression with Automatic Selection of the Penalty Parameter

Linear and logistic ridge regression functions. Additionally includes special functions for genome-wide single-nucleotide polymorphism (SNP) data. More details can be found in <doi:10.1002/gepi.21750> and <doi:10.1186/1471-2105-12-372>.

Authors:Steffen Moritz [aut, cre], Erika Cule [aut], Dan Frankowski [aut]

ridge_3.3.tar.gz
ridge_3.3.zip(r-4.7)ridge_3.3.zip(r-4.6)ridge_3.3.zip(r-4.5)
ridge_3.3.tgz(r-4.6-x86_64)ridge_3.3.tgz(r-4.6-arm64)ridge_3.3.tgz(r-4.5-x86_64)ridge_3.3.tgz(r-4.5-arm64)
ridge_3.3.tar.gz(r-4.7-arm64)ridge_3.3.tar.gz(r-4.7-x86_64)ridge_3.3.tar.gz(r-4.6-arm64)ridge_3.3.tar.gz(r-4.6-x86_64)
ridge_3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ridge/json (API)

# Install 'ridge' in R:

install.packages('ridge', repos = c('https://steffenmoritz.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/steffenmoritz/ridge/issues

Uses libs:

gsl– GNU Scientific Library (GSL)

Datasets:

GenBin - Simulated genetic data with a binary phenotypes
GenCont - Simulated genetic data with continuous outcomes
Gorman - The Ten-Factor data first described by Gorman and Toman (1966).
Hald - Hald data

On CRAN:

regression ridge-regression gsl

7.11 score 19 stars 1 packages 146 scripts 1.6k downloads 19 mentions 6 exports 0 dependencies

Last updated from:95f1b6d46a. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	154
linux-devel-x86_64	OK	121
source / vignettes	OK	168
linux-release-arm64	OK	138
linux-release-x86_64	OK	125
macos-release-arm64	OK	84
macos-release-x86_64	OK	221
macos-oldrel-arm64	OK	121
macos-oldrel-x86_64	OK	321
windows-devel	OK	185
windows-release	OK	111
windows-oldrel	OK	107
wasm-release	OK	107

Exports:linearRidge linearRidgeGenotypes linearRidgeGenotypesPredict logisticRidge logisticRidgeGenotypes pvals

Dependencies:

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
ridge-package description	ridge-package
Simulated genetic data with a binary phenotypes	GenBin GenBin_genotypes GenBin_phenotypes
Simulated genetic data with continuous outcomes	GenCont GenCont_genotypes GenCont_phenotypes
The Ten-Factor data first described by Gorman and Toman (1966).	Gorman
Hald data	Hald
Linear ridge regression.	coef.ridgeLinear linearRidge nobs.ridgeLinear plot.ridgeLinear predict.ridgeLinear print.ridgeLinear print.summary.ridgeLinear summary.ridgeLinear
Fits linear ridge regression models for genome-wide SNP data.	linearRidgeGenotypes
Predict phenotypes from genome-wide SNP data based on a file of coefficients	linearRidgeGenotypesPredict
Logistic ridge regression.	coef.ridgeLogistic logisticRidge plot.ridgeLogistic predict.ridgeLogistic print.ridgeLogistic print.summary.ridgeLogistic summary.ridgeLogistic
Fits logistic ridge regression models for genomoe-wide SNP data.	logisticRidgeGenotypes
Predict fitted probabilities from genome-wide SNP data based on a file of coefficients	logisticRidgeGenotypesPredict
Compute p-values for ridgeLinear and ridgeLogistic models	plot.pvalsRidgeLinear plot.pvalsRidgeLogistic print.pvalsRidgeLinear print.pvalsRidgeLogistic pvals pvals.ridgeLinear pvals.ridgeLogistic
ridge: Linear and logistic ridge regression functions.	ridge